Perl used to the main choice for GUPPS, but is was a collection of hacks. The current version uses Python and it is designed with modularity and more professionalism. Soon, Perl will be developed in a fashion after Python, and then PHP will be developed. So for now, Perl is disabled by default because you shouldn't use hack software. If you actually try to run it, it won't work because GUPPS's structure has been changed to reflect modularity and other good things.